.gitattributes
.gitignore
bin/convert-pheno
Changes
CITATION.cff
cpanfile
lib/Convert/Pheno.pm
lib/Convert/Pheno/BFF/DerivedEntities.pm
lib/Convert/Pheno/BFF/ToOMOP.pm
lib/Convert/Pheno/BFF/ToPXF.pm
lib/Convert/Pheno/CDISC.pm
lib/Convert/Pheno/CLI/Args.pm
lib/Convert/Pheno/Context.pm
lib/Convert/Pheno/CSV.pm
lib/Convert/Pheno/DB/Similarity.pm
lib/Convert/Pheno/DB/SQLite.pm
lib/Convert/Pheno/Emit/OMOP.pm
lib/Convert/Pheno/IO/CSVHandler.pm
lib/Convert/Pheno/IO/FileIO.pm
lib/Convert/Pheno/JSONLD.pm
lib/Convert/Pheno/Mapping/BFF/Individuals/Tabular.pm
lib/Convert/Pheno/Mapping/Shared.pm
lib/Convert/Pheno/Model/Bundle.pm
lib/Convert/Pheno/OMOP/Definitions.pm
lib/Convert/Pheno/OMOP/ParticipantStream.pm
lib/Convert/Pheno/OMOP/Source.pm
lib/Convert/Pheno/OMOP/ToBFF.pm
lib/Convert/Pheno/OMOP/ToBFF/Biosamples.pm
lib/Convert/Pheno/OMOP/ToBFF/Individuals.pm
lib/Convert/Pheno/OpenEHR/ToBFF.pm
lib/Convert/Pheno/PXF/ToBFF.pm
lib/Convert/Pheno/PXF/ToBFF/Biosamples.pm
lib/Convert/Pheno/PXF/ToBFF/Individuals.pm
lib/Convert/Pheno/REDCap.pm
lib/Convert/Pheno/Runner.pm
lib/Convert/Pheno/Tabular/Record.pm
lib/Convert/Pheno/Tabular/REDCap/Dictionary.pm
lib/Convert/Pheno/Utils/Default.pm
lib/Convert/Pheno/Utils/Schema.pm
lib/convertpheno.py
LICENSE
Makefile.PL
MANIFEST			This list of files
mkdocs.yml
share/db/cdisc.db
share/db/concepts_candidates_2_exposure.csv
share/db/hpo.db
share/db/icd10.db
share/db/ncit.db
share/db/omim.db
share/db/README
share/ex/perl.pl
share/ex/python.py
share/schema/mapping.json
t/00-load.t
t/01-api-bff-pxf.t
t/02-api-tabular.t
t/03-api-omop.t
t/04-api-stream-omop.t
t/05-errors.t
t/06-mapping-errors.t
t/07-api-bff-omop.t
t/08-jsonld.t
t/09-pxf-behavior.t
t/10-bff2omop-behavior.t
t/11-mapping-utils.t
t/12-db-similarity.t
t/13-db-sqlite.t
t/14-csvhandler-utils.t
t/15-convertpheno-orchestration.t
t/16-omop-behavior.t
t/17-context-bundle.t
t/18-cli-entities.t
t/19-cli-regression.t
t/20-cli-stream-omop.t
t/21-openehr-behavior.t
t/21-search-audit.t
t/22-fileio-gzip.t
t/23-cli-help.t
t/24-tabular-raw-values.t
t/25-json-bridge.t
t/26-omop-biosamples.t
t/bff2csv/out/individuals.csv
t/bff2jsonf/out/individuals.fold.json
t/bff2omop/in/individuals.json
t/bff2omop/out/eunomia_CONDITION_OCCURRENCE.csv
t/bff2omop/out/eunomia_OBSERVATION.csv
t/bff2omop/out/eunomia_PERSON.csv
t/bff2omop/out/eunomia_PROCEDURE_OCCURRENCE.csv
t/bff2pxf/in/individuals.json
t/bff2pxf/in/README
t/bff2pxf/out/pxf.json
t/cdisc2bff/in/cdisc_odm_data.xml
t/cdisc2bff/in/cdisc_odm_dictionary.csv
t/cdisc2bff/in/README
t/cdisc2bff/out/individuals.json
t/cdisc2pxf/out/pxf.json
t/csv2bff/in/csv_data.csv
t/csv2bff/in/csv_mapping.yaml
t/csv2bff/out/individuals.json
t/csv2omop/out/csv_CONDITION_OCCURRENCE.csv
t/csv2omop/out/csv_DRUG_EXPOSURE.csv
t/csv2omop/out/csv_MEASUREMENT.csv
t/csv2omop/out/csv_OBSERVATION.csv
t/csv2omop/out/csv_PERSON.csv
t/csv2pxf/out/pxf.json
t/lib/Test/ConvertPheno.pm
t/omop2bff/in/CONCEPT.csv
t/omop2bff/in/DRUG_EXPOSURE.csv
t/omop2bff/in/gz/CONCEPT.csv.gz
t/omop2bff/in/gz/DRUG_EXPOSURE.csv.gz
t/omop2bff/in/gz/omop_cdm_eunomia.sql.gz
t/omop2bff/in/gz/PERSON.csv.gz
t/omop2bff/in/mimic_specimen/biosamples.json
t/omop2bff/in/mimic_specimen/CONCEPT.csv
t/omop2bff/in/mimic_specimen/individuals.json
t/omop2bff/in/mimic_specimen/PERSON.csv
t/omop2bff/in/mimic_specimen/SPECIMEN.csv
t/omop2bff/in/omop_cdm_eunomia.sql
t/omop2bff/in/PERSON.csv
t/omop2bff/in/README.md
t/omop2bff/out/individuals.json
t/omop2bff/out/individuals_csv.json
t/omop2bff/out/individuals_csv.json.gz
t/omop2bff/out/individuals_drug_exposure.json.gz
t/omop2bff/out/ohdsi.json
t/omop2pxf/out/pxf.json
t/openehr2bff/in/compo_corona.json
t/openehr2bff/in/gecco_personendaten.json
t/openehr2bff/in/gecco_personendaten_patient.json
t/openehr2bff/in/ips_canonical.json
t/openehr2bff/in/laboratory_report.json
t/openehr2bff/in/README.md
t/openehr2bff/out/individuals.json
t/openehr2pxf/out/pxf.json
t/pxf2bff/in/pxf.json
t/pxf2bff/in/pxf.yaml
t/pxf2bff/in/pxf_biosamples.json
t/pxf2bff/in/README
t/pxf2bff/out/biosamples.json
t/pxf2bff/out/individuals.json
t/pxf2bff/out/individuals.yaml
t/pxf2csv/out/pxf.csv
t/pxf2jsonf/out/pxf.fold.json
t/redcap2bff/err/redcap_mapping_err1.yaml
t/redcap2bff/err/redcap_mapping_err2.yaml
t/redcap2bff/err/redcap_mapping_err3.yaml
t/redcap2bff/err/redcap_mapping_err4.yaml
t/redcap2bff/err/redcap_mapping_err5.yaml
t/redcap2bff/in/redcap_data.csv
t/redcap2bff/in/redcap_dictionary.csv
t/redcap2bff/in/redcap_mapping.yaml
t/redcap2bff/out/individuals.json
t/redcap2pxf/out/pxf.json
t/schema/malformed.json
VERSION
xt/bff2omop.t
xt/csv2omop.t
xt/ohdsi.t
xt/protobuff.t
xt/self-validate-schema.t
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
